Done a bit of trouble shooting and it is due to Khas' lighting system, remove it from the scripts and the tint screen is fine with advanced lighting system.
So my new query is, how do I get Khas lighting system to work with 640x480 res?
Cheers :)
Edit:
Exact changes to my res are;
# Default Resized Min Tiles Default Min Tiles New
# Width 544 640 17 20
# Height 416 480 13 15
